Please click on a dataset to view it in Cellxgene Server.

local

• Adipocyte-discovery
  • ADIv_R10_R11_bb20220928132413.h5ad | annotations: new
  • celltypist_updated_ADIv_R10_R11_bb20220928132413.h5ad | annotations: new
• Atlases
  • AllenBrainAtlas_CNS_Atlas.h5ad | annotations: new
  • CATlas-2021_ATACseq_GABA.h5ad | annotations: new
  • CATlas-2021_ATACseq_GLUTA.h5ad | annotations: new
  • CATlas-2021_ATACseq_nonneurons.h5ad | annotations: new
  • Cao-2020_FetalAtlas_EXP23000278.h5ad | annotations: new
  • CellTypistV2_Blood.h5ad | annotations: new
  • CellTypistV2_Hippocampus_downsampled.h5ad | annotations: new
  • CellTypistV2_Liver.h5ad | annotations: new
  • CellTypistV2_Liver_downsampled_log_norm.h5ad | annotations: new
  • CellTypistV2_Pancreas.h5ad | annotations: new
  • Linnarsson-2022_Mediu_spiny_neurons_EXP22001979.h5ad | annotations: new
  • Linnarsson-2022_Splatter_neurons_EXP22001979.h5ad | annotations: new
  • Linnarsson-2022_neurons_subsample_EXP2200197.h5ad | annotations: new
  • Linnarsson-2022_nonneurons_subsample_EXP2200197.h5ad | annotations: new
  • Linnarsson-2023_fetal-brain-subsample.h5ad | annotations: new
  • Popescu-2019_Liver_EXP23000278.h5ad | annotations: new
  • TS-2022_Liver_EXP23000719.h5ad | annotations: new
  • pbmc3k.h5ad | annotations: new
• Carmen_test
• Dopaminergic_neurons
• EXP23003414_MJ_Tony_brain+CNS_datasets
  • Agarwal-2023_retinal.h5ad | annotations: new
  • Linnarsson-2023_midbrain_EXP23003414.h5ad | annotations: new
  • Linnarsson-2023_splatter_EXP23003414.h5ad | annotations: new
  • Linnarsson-2023_subsetDopaminergicNeurons_EXP23003414.h5ad | annotations: new
  • Yan-2020_retinaatlas_EXP24000356.h5ad | annotations: new
• Hepatocyte_Tox_v3
  • bb20240221121629_Hepatotox_v3.h5ad | annotations: new
  • bb20240221121629_Hepatotox_v3_relabelled.h5ad | annotations: new
  • bb20240221121629_Hepatotox_v3_relabelled_eTF.h5ad | annotations: new
  • bb20240221121629_Hepatotox_v3_relabelled_eTF_seurat_categorical.h5ad | annotations: new
  • bb20240221121629_Tox_bb20231023125424_ioHeps_integrated.h5ad | annotations: new
  • bb20240221121629_Tox_bb20231023125424_ioHeps_integrated_5000.h5ad | annotations: new
• MJ_workspace
  • BIGBULK.h5ad | annotations: new
  • Linnarsson-2023_Dopaminergicneurons_EXP23003414.h5ad | annotations: new
  • schmidt-betacells.h5ad | annotations: new
• NK-discovery
  • bb20220405085150_NovaSeq_GEX_10x.h5ad | annotations: new
  • bb20220714124000_celltypist_query_predictions.h5ad | annotations: new
  • bb20220714124000_novaseq_with_eTFs.h5ad | annotations: new
  • bb20220714124000_with_eTFs_new.h5ad | annotations: new
  • bb20230124103838_NK_EXP23001477.h5ad | annotations: new
  • bb20230124103838_NKv_R11_R12_R13_Kolf.h5ad | annotations: new
  • bb20230124103838_celltypist_query_predictions_refined.h5ad | annotations: new
  • bb20230124103838_with_eTFs_RNA.h5ad | annotations: new
  • bb20230124103838_with_eTFs_SCT.h5ad | annotations: new
• UbeR
  • bb20230628152358_UbeR2_DoxOnly-NoeTF.h5ad | annotations: new
  • bb20230628152358_UbeR2_E6Only-NoeTFBCsIncluded.h5ad | annotations: new
  • bb20230628152358_UbeR2_Full.h5ad | annotations: new
  • bb20230628152358_UbeR2_Full_CN7sub.h5ad | annotations: new
  • bb20230628152358_UbeR2_NoeTFBCsIncluded.h5ad | annotations: new
  • bb20230628152358_UbeR2_fullobject_Uber2eTFBCswCN.h5ad | annotations: new
  • bb20231218135505_UbeR1_E6_thresh1_CNfilt_allsample_cellXgene.h5ad | annotations: new
  • bb20231218135505_UbeR1_ECTO_thresh1_CNfilt_allsample_cellXgene.h5ad | annotations: new
  • bb20231218135505_UbeR1_ENDO_thresh1_CNfilt_allsample_cellXgene.h5ad | annotations: new
  • bb20231218135505_UbeR1_MESO_thresh1_CNfilt_allsample_cellXgene.h5ad | annotations: new
  • bb20231218135505_UbeR1_thresh1_CNfilt_allsample_cellXgene.h5ad | annotations: new
  • bb20240916151231_ZUbeR_pilot_allsample_cellXgene.h5ad | annotations: new
  • uber2_full_all_eTFv1_rem_nonvar_lncRNA.h5ad | annotations: new
  • bb20230628152358_UbeR2_E6Only-AllPools_annotations
• ioAdipocytes
  • EXP22001992_white_adipocytes_Emont.h5ad | annotations: new
  • EXP22002028_Sun_Adipocytes-025_Human_WAT_10x.h5ad | annotations: new
  • EXP22002028_Sun_Adipocytes-025_human_BAT_10x.h5ad | annotations: new
  • EXP22002028_Sun_Adipocytes-025_human_BAT_10x_adipocytes_sub_population.h5ad | annotations: new
  • EXP23001913_brown_adipocytes180_Gupta.h5ad | annotations: new
  • EXP23001913_white_adipocytes179_Gupta.h5ad | annotations: new
• ioAstrocyte
• ioDOPA
  • bb20231211112343_ioDOPAFull_EXP23004198.h5ad | annotations: new
  • bb20231211112343_ioDOPA_EXP23004198.h5ad | annotations: new
• ioEndothelial
  • EXP24001538_Kalucka_endothelial_245.h5ad | annotations: new
• ioGABA
  • bb20220317144426_marco_cmo_deepseq.SCT.h5ad | annotations: new
  • bb20220317144426_marco_cmo_post_filters.h5ad | annotations: new
  • seurat_iGABA_01.SCT.h5ad | annotations: new
• ioGLUT
  • Glut_timecourse_annotated.SCT.h5ad | annotations: new
  • NGN2_D14_V2.h5ad | annotations: new
  • NGN2_D14_V2_2.h5ad | annotations: new
  • NGN2_D14_V2_3.h5ad | annotations: new
  • NGN2_D14_V2_4.h5ad | annotations: new
  • bb20221025094742_ioGlut_RNA.h5ad | annotations: new
  • bb20230426134135_D14_NGN2plus1_GEX.h5ad | annotations: new
  • bb20230426134135_NGN2plus1_GEX.h5ad | annotations: new
  • bb20230825124422_D14_NGN2_plus1_10X.h5ad | annotations: new
  • bb20231103104551_D14_NGN2_plus1_Split.h5ad | annotations: new
  • ioGlut_lot3_noROCKi_DAPT2_4.h5ad | annotations: new
  • scRNAseq_strategies_to_mitigate_non-neuronal.h5ad | annotations: new
• ioHepatocyte
  • Aizrani-2019_Hepatocytes_EXP23000680.h5ad | annotations: new
  • Andrews-2021_Hepatocytes_EXP23000680.h5ad | annotations: new
  • Andrews-2021_cells_EXP23000680.h5ad | annotations: new
  • Andrews-2021_nuclei_EXP23000680.h5ad | annotations: new
  • Bondoc-2021_HepatocytesHarmonised_EXP23000680.h5ad | annotations: new
  • Bondoc-2021_HepatocytesOriginal_EXP23000680.h5ad | annotations: new
  • bb20210903160318.seurat.SCT.h5ad | annotations: new
  • bb20230106103155_hepatocyte.h5ad | annotations: new
  • bb20230503124342_CT_bb20231023125424_GM_integrated_merged_final.h5ad | annotations: new
  • bb20230503124342_iHep_EXP23001512-for-cellxGene.h5ad | annotations: new
  • bb20230503124342_iHep_EXP23001512-integrated-harmony-with-CTliver.h5ad | annotations: new
  • bb20231023125424_iHep_EXP24000233_reclustered_final.h5ad | annotations: new
  • bb20231023125424_ioHep_parseM1.h5ad | annotations: new
  • bb20240221121629_Tox_bb20231023125424_ioHeps_integrated.h5ad | annotations: new
  • EXP23000680_Cristinas_different_integrations
    • Cristinas_andrews_sc_HARMONY.h5ad | annotations: new
    • Cristinas_guilliams_sc_HARMONY.h5ad | annotations: new
• ioMicroglia
  • EXP23001544_BRI_microglia_collab_D20.h5ad | annotations: new
  • EXP23001544_BRI_microglia_collab_RNA.h5ad | annotations: new
  • EXP23001544_BRI_microglia_collab_RNA_D0.h5ad | annotations: new
  • EXP23001544_BRI_microglia_collab_RNA_Early.h5ad | annotations: new
  • PR_conde_olah_patel_integration.h5ad | annotations: new
  • PR_olah_patel_integration.h5ad | annotations: new
  • bb20220407132441_NovaSeq_GEX_10x.h5ad | annotations: new
  • bb20231116133015_NovaSeq_GEX_10x.h5ad | annotations: new
  • ioMicroglia_and_Ex_vivo.h5ad | annotations: new
  • ioMicroglia_and_Ex_vivo_and_Immune.h5ad | annotations: new
• ioMotor
  • Allmotor_bb20220912145637_SCT.h5ad | annotations: new
  • D14_motor_bb20220912145637_SCT.h5ad | annotations: new
  • bb20231207094648_ioMNProduct_EXP23004101.h5ad | annotations: new
  • bb20231207094648_ioMNProduct_IntegrationWithCC.h5ad | annotations: new
  • ioMN_and_Yadav.h5ad | annotations: new
  • motor_bb20220912145637_SCT.h5ad | annotations: new
• ioNK
• ioOLC
  • bb20240130140601_OLCProduct_Day1.h5ad | annotations: new
  • bb20240130140601_OLCProduct_Day1and8.h5ad | annotations: new
  • bb20240130140601_OLCProduct_Day8.h5ad | annotations: new
  • bb20240130140601_OLCProduct_EXP24001086.h5ad | annotations: new
• ioPancreas
  • Fasolino-2022_Pancreas_EXP23002437.h5ad | annotations: new
  • Muraro-2022_Pancreas_EXP23002437.h5ad | annotations: new
  • Tosti-2021_Pancreas_EXP23002437.h5ad | annotations: new
  • Trirschler-2022_Pancreas_EXP23002437.h5ad | annotations: new
  • Zhu-2023_SCislets_EXP23003269.h5ad | annotations: new
  • bb20231004093442_Pancreas_EXP23003418.h5ad | annotations: new
  • bb20231004093442rFULL_PBCv_withETFs.h5ad | annotations: new
• ioSensory
  • bb20220822115406_ioSensory_C3-D07-D14.h5ad | annotations: new
  • bb20220822115406_ioSensory_C3-D10-D17.h5ad | annotations: new
  • bb20220822115406_ioSensory_C3-D14-D17.h5ad | annotations: new
  • bb20220822115406_ioSensory_C3-D7-D10.h5ad | annotations: new
  • bb20220822115406_ioSensory_C3-iPSC-D07-D14.h5ad | annotations: new
  • bb20220822115406_ioSensory_C3-iPSC-D10-D17.h5ad | annotations: new
  • bb20220822115406_ioSensory_C3-iPSC-D14-D17.h5ad | annotations: new
  • bb20220822115406_ioSensory_C3-iPSC-D7-D10.h5ad | annotations: new
  • ioSensory_C3iPSC.h5ad | annotations: new
  • ioSensory_C3iPSCv2.h5ad | annotations: new
  • ioSensory_C3only.h5ad | annotations: new
  • sensory_bb20220822115406_Counts.h5ad | annotations: new
  • sensory_bb20220822115406_SCT.h5ad | annotations: new
• ioSkeletal
  • EXP21000565_skeletalmyocytesnucleicell.h5ad | annotations: new
  • EXP21000565_skeletalmyocyteswholecell.h5ad | annotations: new
• variegated_misc
  • 42eTF_immune_screen_feb_2021.h5ad | annotations: new
  • bb20230619132503_merged_GEX_parse_filteredcells.h5ad | annotations: new
  • bbTestObj_UbeR2_EXP23002071-cn10.h5ad | annotations: new
  • bbTestObj_UbeR2_EXP23002071-cn7.h5ad | annotations: new
  • bbTestObj_UbeR2_EXP23002071.h5ad | annotations: new
  • ngn2_cas9.h5ad | annotations: new
  • ngn2_cas9_novaseq.h5ad | annotations: new

Navigation:

• homepage